Ford 6.0L Power Stroke Diesel :: 2005 F350 - Hesitates / Low Power Driving / Idle

I have a 2005 F-350 Lariat, FX4, CrewCab, with an 8ft Bed if any of that matters. Currently sitting at 191,000 miles and 4,500 Engine Hours I just started running into some issues that I cannot figure out. To start with here is a list of all the mods and prior maintenance that I've done to my truck over that last 6+ years that I've owned it.

I purchased the truck in 2010 and had no issues whatsoever for the first 3 years.....then it all started. While pulling a camper home from vacation "still bone stock" the truck overheated and by the time I realized it it was to late. I ended up blowing a head gasket cracking a head and blowing a hole in my coolant reservoir from the heat & compression of the engine in the coolant system. So to the shop it went.

All of this was done at the same time at just under 4,000 engine hours:

1) Both heads were sent out to be pressure tested "which is where the crack was found", so 1 replacement head and the other trued up and tested by the machine shop
2) All 8 injectors replaced with Airtex/Wells New/Reman
3) ARP Head Studs
4) BPD EGR Cooler
5) New Stock Coolant Reservoir
6) New Stock Oil Cooler
7) Motorcraft Coolant & Oil/Oil Filter Change
8) New Serpentine Belt

After getting the truck back I installed some upgrades that I had wanted but didn't want to do until I had head studs. 4" Turbo back Diamond Eye Performance exhaust, Bully Dog GT Tuner with an EGT Pyro, coolant changed to Caterpillar ELC, Sinister Diesel coolant filtration system, new Optima batteries "I hated them",

Forward a year with no problems I had a crank but no start. I ended up having a bad IPR. A buddy rebuilt the turbo since I had it out and it was leaking. He apparently did something wrong because it took its own life sometime after. So a brand new stock Garrett Turbo with a Wicked Wheel 2 & I changed the IPR "don't remember the brand." Also replaced the factory paper air filter with a cleanable one from AFE that fits in the factory cold air intake.

Little more time and I started to have some overheating issues again, luckily the Bully Dog was monitoring and I had alerts set up so I caught it way before it caused any serious damage. Turned out the fan clutch wasn't working. So I replaced the Water Pump with one from dieselsite.com that has a steel impeller, also replaced the computer controlled fan clutch with a 7.3L mechanical fan clutch and an adapter from BPD.

After that the batteries I hated were replaced. I installed Oddssey Extreme 950CCA ones, a new 185A alternator from FICMRepair.com as well as the complete battery wiring interconnect kit. Did the blue spring upgrade. Replaced my FICM with the BPD 6 phase at 54V setting. Also I changed my starter to an 6.4L Ultima one from O'Reily Auto to bring me up from that slow crank of the 6.0L at about 150RPM to the 225RPM of the 6.4L.

So now on to the current issue. This has happened in the last month and may be related to the issue. I had some small coolant leaks and wanted them fixed. Pressure tested the system & found the radiator and timing cover gasket leaking. I installed a new stock radiator and lower radiator hose. Had the shop do the gasket and a serpentine belt due to cleaners being all over it. During replacement of the timing cover gasket my mechanic found that the LPOP gears had some damage as if something had be in there at one time. Not sever damage just minor. LPOP replaced with brand new one from Ford.

After I got the truck back it was fine for 2 weeks, no leaks or any problems whatsoever. Then I noticed a hesitation as I was leaving work at idle. You could see the RPM's moving up and down by about 50 as it sat there at idle. It got really bad and eventually stalled on me. It fired right back up and ran fine after. I was thinking water in the fuel or just maybe old fuel because it was kinda old and I was at 1/4 of a tank. I went and filled up and it ran great all the way home. Day or so later same thing. At idle you can see the RPM fluctuating and while driving it feels like it has no power at times then it goes away and runs fine. So I changed both fuel filter with Motorcraft ones and put in a new oil filter. It is the Wix brand but I've be running it for years with no issues, one was also in it way before this issues started. The oil has about 2,000 miles on it currently. I verified fuel pressure at idle to be at 70PSI. I tried unplugging the ICP at idle with no change in the hesitation. So I plugged in my SG2 and started to see if I could see anything out of the ordinary.

OAT - 60 Degrees F
KOEO Engine Cold - FMP - 54.5V, ICV - 0.25V, ICP - 0, IPR - 14.9
KOER Engine Warm - FMP - 54.5V, ICV - 0.82V, ICP - 576, IPR - 23.5
Cruise at 40MPH - FMP - 54.5V, ICV - 1.14V, ICP - 965, IPR - 32.9
Cruise at 50MPH - FMP - 54.5V, ICV - 1.42V, ICP - 1,190, IPR - 38.0
Cruise at 60MPH - FMP - 54.5V, ICV - 1.27V, ICP - 1,143, IPR - 37.2

While driving this issue comes and goes very randomly. The only parameter I notice changing alot is the IPR. It jumps around a lot and sometimes it will go to 85. I know that this isn't a good thing so I am going to change the IPR later today or tomorrow. I already had a brand new Motorcraft one to put in, plus at the very least I want to look at the screen. I had read somewhere that there could be air in the oil system and that if you run at a high RPM it can remove this air. I never seen any bubbles or anything on the dipstick. My brother ran the truck for me at 3,000RPM for 5 minutes. No hesitation during the test but he didn't have the SG2 plugged in so I don't know the parameters during the test. I thought that it worked but then it came back after a few miles of driving. The above parameters are from this mornings drive home from work.